PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s00620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 205aa    MW: 23028.9 Da    PI: 5.7587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s00620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183685255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Vradi0007s00620.1 36 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 85
                       899******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-133685IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-283693IPR001471AP2/ERF domain
SMARTSM003801.6E-353699IPR001471AP2/ERF domain
CDDcd000182.08E-323692No hitNo description
SuperFamilySSF541711.9E-193693IPR016177DNA-binding domain
PRINTSPR003675.9E-83748IPR001471AP2/ERF domain
PRINTSPR003675.9E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEIQFQQPNL QHQKSGIAVT RGGKLKGRSR SNNNNKFVGV RQRPSGRWVA EIKDTTQKIR  60
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFITHVSLDS PLASRIHLSN CREDFGSGYQ  120
SNTSWGFGPV FDRFPIAQIL DVPKIDDCLT DAADLELSEF ERMKVERQIS ASLYAINGVQ  180
EYMETVQDSS ETLWDLPPLC SLFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-143792359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-176AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970958.13e-89PREDICTED: ethylene-responsive transcription factor RAP2-11-like isoform X1
TrEMBLA0A0S3RWH12e-73A0A0S3RWH1_PHAAN; Uncharacterized protein
STRINGGLYMA19G29000.12e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-28related to AP2 11